Convert your .h5ad to .rds
Upload an AnnData .h5ad object and download a converted Seurat .rds file. Use it with R-based tools like Seurat, Monocle, and CellChat. Works with files from CELLxGENE, Scanpy, and scvi-tools. All metadata is preserved — no R or Python installation required.
Upload your AnnData object
Drag & drop your .h5ad file here
or click to browse
Max file size: 100 MB
What gets preserved
- Expression matrices (
.Xand.layers→ assay slots) - Cell metadata (
.obs→@meta.data) - Gene metadata (
.var→@meta.features) - Embeddings (
.obsm→@reductions) - Graphs (
.obsp→@graphs) - Unstructured metadata (
.uns→@misc)
Looking to convert in the other direction? Convert .rds to .h5ad