SingleCellConvert — Convert Between Seurat and AnnData Single-Cell Formats

R

I have a Seurat object

Convert your .rds Seurat object to AnnData .h5ad format

Convert to AnnData
Py

I have an AnnData object

Convert your .h5ad AnnData object to Seurat .rds format

Convert to Seurat

Convert between .rds and .h5ad with full metadata preservation

SingleCellConvert converts Seurat .rds objects to AnnData .h5ad files and AnnData .h5ad objects to Seurat .rds files. Cell metadata, gene metadata, embeddings (PCA, UMAP, tSNE), nearest-neighbor graphs, and unstructured metadata are all preserved — no Python or R installation required.

Free for files under 100 MB. View pricing for larger files up to 20 GB.